Introduction | Load Package | Load Example Data | Quality control | Run BLISA at the LR level | Run BLISA at the pathway level | Visualization | Spatial Map of Hotspot Bins | Session Information

Introduction | Load Package | Load Example Data | Bin Cells into Hexagons | Run BLISA | Rank LR Pairs by Hotspot Count | Spatial Map of Hotspot Bins | Cell-Cell Interaction (CCI) Heatmaps | Across all LR pairs | For a single LR pair | Aggregated across LR pairs | Spatial Map of Dominant Cell-Type Pairs | Session Information

Installation | Quick start | Load data | Grid-based analysis | Density calculation | Find Regions-of-interest (ROIs) | Detected by algorithm | Select ROI by user | Testing relationship between cell types | Cell-based analysis | cell annotation based on grid density